How to Fill Holes in MDF Trim?

MDF (Medium-Density Fiberboard) is a widely used alternative to standard plywood, known for its durability and often more budget-friendly cost.

MDF Trim designs

Whether you’ve used MDF for constructing cabinets or installing trim, one thing is certain: you’ll need to fill in those unsightly nail holes.

While this task might seem straightforward, there are different types of fillers and methods, and some are better than others.

Let’s start by picking the right filler materials you can use to fill nail holes in MDF and discuss the pros and cons of each.

How to Filling Nail Holes in MDF?

What to Use to Fill Nail Holes in MDF?

The type of substance you use will dictate the methods you use and possibly the success you will have in sealing up each nail hole. What follows are several compounds and materials that are often used to fill nail holes in MDF.

1. Spackling Compound

Spackle is a combination of clay and chalk. It is often used to fill holes in drywall.

The advantage of using spackling compound is that it is easy to find, inexpensive, and can be effective in filling the hole.

Dry time: One or two hours for small nail holes. Overnight for large holes.

How to Use Spackling Paste?

  • You start by using a putty knife to spread the spackling compound into the nail hole.
  • Make sure it is filled, and remove any excess from around the sides.
  • Once you are satisfied with the results, allow the compound to dry and then sand appropriately to create a smooth finish before you apply the paint.
  • If the hole is larger, you may need to use a reinforced metal patch or fiber tape to cover the area after applying the compound.

Lightweight Spackle

The downside is that the spackling compound is not the best material for wood surfaces. It is better suited for the materials used in drywall. It is recommended that, if you can find a water-based wood filler, that works better compared to spackling compound.

2. Solvent-Based Wood Filler

This type of wood filler is arguably better than spackling compound but not as good as water-based wood fillers.

The advantage of solvent-based wood filler is its strength, durability, and ability to be sanded and shaped rather easily.

Dry time: 2 to 8 hours 

Usage Instructions

  • Before you begin, put on a pair of nitrile or latex gloves.
  • Start by cutting the wood filler into small pieces.
  • Then, apply each piece over the nail hole and smooth it using a putty knife.
  • Be sure the nail hole is filled in with the filler. You will need to gently push the filler into the hole.
  • Once the filler dries, you can sand it flat, and it will be ready for the paint or sealant.

The downside of solvent-based wood fillers is that they might release harmful fumes and they cannot be exposed to any penetrating finishes. That means if you plan on using an oil-based wood stain, that will not work, as the filler will not absorb the stain correctly.

However, if you are using a clear sealer or standard paint, that will work with the solvent-based wood filler.

While solvent-based wood fillers offer a robust solution for filling nail holes, there’s an eco-friendly and easy-to-use alternative that you should consider—water-based wood filler.

3. Water-based Wood Filler

This is my preferred method of filling nail holes in interior trims.

In addition to the ability to stain and color match, a significant advantage is that they are eco-friendly and emit fewer fumes compared to their solvent-based counterparts. This makes water-based fillers a safer option, especially if you are working in an enclosed space.

Dry time: 30 minutes to 2 hours 

Features and Benefits

  • Easy to Use: Water-based wood fillers are easy to apply using a putty knife and can be cleaned up quickly with just water.
  • Quick Drying: They usually have a shorter drying time, often just a couple of hours, allowing you to complete your project more quickly.
  • Versatile: These fillers can be sanded, stained, and painted, giving you more flexibility during finishing.
  • Low Odor: The absence of harsh solvents means these fillers typically have a much lower odor, making for a more pleasant working environment.

Filling Nail Holes in MDF with wood filler

How to Use Water-Based Wood Filler?

  • Prepare the Surface: Wipe down the MDF trim with a clean cloth to remove any dust or debris.
  • Application: Scoop a small amount of the filler onto a putty knife and apply it directly to the nail hole. Press firmly to ensure the hole is completely filled.
  • Smooth and Scrape: Use the edge of the putty knife to scrape away any excess filler so that it is flush with the surface of the MDF.
  • Let it Dry: Allow the filler to dry according to the manufacturer’s instructions. Water-based fillers usually dry more quickly than other types.
  • Sand the Area: Once the filler is dry, lightly sand the area to create a smooth, flush surface.
  • Clean and Finish: Wipe down the surface to remove any residual dust before painting, staining, or applying any other finish.


While water-based wood fillers are an excellent option for many applications, they are not ideal for outdoor projects, as they are generally less resistant to water and humidity compared to solvent-based or epoxy fillers.

4. Two-Part Epoxy Fillers

This type of filler is commonly used for nail holes in MDF. Because the epoxy adheres to the fibers and pores in the wood, it will stick and last for quite some time.

Dry time:  2 hours to harden, 8 hours to dry. It will take several days to cure.

You will need to apply the two-part epoxy the right way to get the best results.

Follow the instructions when applying the filler.

  • Wipe clean the MDF and apply the first part of the filler to the nail hole.
  • Make sure that it fills up the hole before applying the second part.
  • Once both parts are in place, let it dry and smooth it out by sanding.

The downside is that two-part epoxy fillers are somewhat more expensive and difficult to obtain. Plus, there is the extra step in applying the second part which makes the application process a little longer.

In addition, the two-part epoxy fillers are a little more difficult to sand flat.

5. Painter’s Putty

Painter’s putty is one of the most common and easiest-to-use fillers on the market.

The advantages start with the low cost of the product, followed by the speed at which it can be applied. Plus, it can be sanded after it dries for a smooth appearance.

Dry time: Few hours to overnight

Painters Putty

  • Start by identifying the location of the nail hole you want to fill and clean the surface.
  • Apply the putty with a putty knife to the hole and press it in until it is filled.
  • You can now shave off any excess putty so that the surface is now smooth.
  • Let the putty dry overnight and sand the area until you get that smooth surface that is primed for painting.

There is no real downside to painter’s putty in most situations. However, it is not as strong or durable as the wood filler.

6. Paintable Caulk

In most cases, caulk is not the preferred material to use as wood filler. Caulk can be messy, but the real issue is that caulk does not sand and can shrink over time.

It is meant to be used on other types of material and not for filling nail holes in MDF or wood.

However, if all you have is caulk, you could use it in case of an emergency and paint over it. Just make sure you use a paintable latex caulk and not silicone sealant.

Caulk is best for filling gaps or joints between drywall or trim pieces. But for dents, nail holes, and cracks in the MDF, you are better off using wood filler.

Pros and Cons of Different Fillers

Type of Filler Pros Cons
Spackling Compound Easy to find, inexpensive, easy to apply Not ideal for wood surfaces, better for drywall
Solvent-Based Wood Filler Strong, durable, easy to sand and shape Harmful fumes, not compatible with oil-based stains
Water-Based Wood Filler Eco-friendly, low odor, quick-drying, versatile Not ideal for outdoor use, less resistant to water and humidity
Two-Part Epoxy Fillers Durable, adheres well to fibers and pores Expensive, harder to obtain, difficult to sand
Painter’s Putty Low-cost, easy to apply, quick-drying Less strong and durable compared to wood filler
Paintable Caulk Can be used in emergencies, paintable Does not sand, can shrink, not ideal for filling nail holes
Now that we’ve covered the different types of fillers you can use, let’s get into the nitty-gritty of how to actually go about the process of filling those nail holes in detail.

How to Fill Nail Holes in MDF Trim?

I have already explained how to use the specific fillers. Consider this a general guideline for filling nail holes in MDF.

Let’s say you got the proper nail hole filler material, and you are ready to start. You should always read the manufacturer’s instructions.

But in most cases, you can follow these step-by-step instructions to get the results you desire.

  1. Prepare the Surface: You should wipe down the MDF with a clean cloth. This will catch most of the dust particles and other small pieces that might make filling nail holes a little tougher. Do not use water on the MDF because it will cause the material to expand. A dry cloth works just fine.
  2. Apply Filler: If you are using wood filler for example, apply a little to the nail hole, or you can put it on the putty knife. Apply it directly and use the putty knife to push in the filler while wiping away any excess.
  3. Smooth the Surface and Allow It to Dry: You can now smooth the surface using the putty knife once the nail hole has been properly filled. Be sure to fill all the nail holes before taking the next step. Let the filler dry overnight or as long as the manufacturer’s instructions say it will take.
  4. Sand the Surface to Flush with Surrounding Surface: Once dry, you can sand the surface to ensure that the filler is flush with the surrounding area. You can run your finger along the surface and feel if there are any bumps or divots that keep the surface from being smooth.
  5. Clean & Wipe Down: Wipe down the MDF to remove any dust or other particles. You can even use an air compressor to blow away such particles from the surface of the MDF. Wipe down afterwards with a clean, dry cloth.The next two steps are optional.
  6. Priming (Optional): If you are going to paint the trim, apply a coat of primer over, including the filled area. This will help the paint adhere better and provide a more uniform finish.
  7. Paint Over: And now you are ready to paint the MDF. You’ll want to apply the first coat of paint, let it dry, then apply the second coat for maximum protection. The second coat will also help to smooth out the surface.
    Sanding between the coats using fine-grit sandpaper will ensure a smooth surface.

Filling nail holes in MDF trim is easy when you apply the right product. Be sure to get the best product for filling nail holes and go step-by-step for the best results.

It may take a little longer to complete the filling process, but the results will be worth it when you have a smooth surface to paint, and the MDF trim will look its best.

Safety Measures

Working with various types of fillers and MDF can expose you to fumes and particulates that may be hazardous if not handled correctly.

Here are some safety tips to keep in mind:

  • Ventilated Area: Always work in a well-ventilated space, especially when using solvent-based fillers, to disperse harmful fumes.
  • Protective Gear: Consider wearing nitrile or latex gloves when handling epoxy and solvent-based fillers. Safety goggles are also advisable to protect your eyes from accidental splashes.
  • Avoid Open Flames: Some fillers are flammable. Make sure to keep them away from open flames or heat sources.
  • Safe Disposal: Dispose of any unused or excess filler material according to your local waste management guidelines.

The above safety steps are general tips. I strongly recommend you read and follow the manufacturer’s instructions and safety guidelines on the filler’s packaging.

Remember, safety first. Being cautious can go a long way in ensuring a successful and injury-free project.